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Gut microbiota / Evidence-based microbiome knowledge (incl. AI chat)
Prebiotics, Probiotics, FMT / Manipulators of the Intestinal Microbiota

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Beta-diversity

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Beta diversity calculates the difference in taxonomic abundance profiles between different microbial environments
Sarangi et al. 2019 J. Clin. Exp. Hepatol. 9: 62–73

Beta-diversity Analysis Revealed that Gut Microbiota Composition Was Different between Adult (3–6 Months) and Aged (22–25 Months) Mice Fed a Normal Chow Diet
Matt et al. 2018 Front Immunol. 9: 1832

There Is Great Diversity in the Microbial Composition between Individuals (Beta-diversity)
Kim et al. 2017 Immunol Rev. 279(1): 90-105

A Very Important Aspect of Prokaryotic Life Is Diversity and Plasticity of the Ecosystem at the Strain Level
Schloissnig et al. 2013 Nature 493(7430)…

References (Sources)

Butyrate and dietary soluble ﬁber improve neuroinﬂammation associated with aging in mice
Matt et al. 2018 Front Immunol. 9: 1832
Chapter 12: Human microbiome analysis
Morgan & Huttenhower 2012 PLoS Comput. Biol. 8: e1002808
Genomic variation landscape of the human gut microbiome
Schloissnig et al. 2013 Nature 493(7430): 45-50
Methods for studying gut microbiota: a primer for physicians
Sarangi et al. 2019 J. Clin. Exp. Hepatol. 9: 62–73
Review
Recycler: an algorithm for detecting plasmids from de novo assembly graphs
Rozov et al. 2016 Bioinformatics 33(4): 475-482
The gut microbiome in Parkinson’s disease: A culprit or a bystander?
Keshavarzian et al. 2020
The intestinal microbiota: Antibiotics, colonization resistance, and enteric pathogens
Kim et al. 2017 Immunol Rev. 279(1): 90-105

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